![]() If there is no index file, you can use SAMTools to create one (please download SAMTools from and install locally).īAM data that is aligned to an assembly can be viewed as run accessions from the SRA database. The index should be named by appending “. For viewing BAM files, an index file must be found in the same directory as the BAM file. Step 5: BAM data for SRA run accessionsīAM files can be opened from remote locations (ftp, http) and from local computers.Database of Single Nucleotide Polymorphisms (dbSNP).Database of Genomic Structural Variation (dbVar).Online Mendelian Inheritance in Man (OMIM).Database of Genotypes and Phenotypes (dbGaP). ![]() Structure (Molecular Modeling Database).Conserved Domain Search Service (CD Search).BLAST (Basic Local Alignment Search Tool).
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